Index

A

all_categories() (intake_io.dataset.AnnotatedDataset method) (intake_io.dataset.CategorizedDataset method) (intake_io.dataset.dataset.AnnotatedDataset method) (intake_io.dataset.dataset.CategorizedDataset method) AnnotatedDataset (class in intake_io.dataset) (class in intake_io.dataset.dataset) async_impl (intake_io.fsspec.flywheel.FlywheelFileSystem attribute) (intake_io.fsspec.render.RenderFileSystem attribute)

autodetect() (in module intake_io) (in module intake_io.autodetect) AutoSource (class in intake_io.source) (class in intake_io.source.auto) axes (intake_io.source.filepattern.FilePattern property) axes_all (intake_io.source.filepattern.FilePattern attribute) axes_inner (intake_io.source.filepattern.FilePattern property) axes_outer (intake_io.source.filepattern.FilePattern property) axes_type_any (intake_io.source.filepattern.FilePattern attribute)

B

BioformatsSource (class in intake_io.source) (class in intake_io.source.bioformats)

C

cachable (intake_io.fsspec.flywheel.FlywheelFileSystem attribute) (intake_io.fsspec.render.RenderFileSystem attribute) CachedDataset (class in intake_io.dataset) (class in intake_io.dataset.cache) cat_file() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) CategorizedDataset (class in intake_io.dataset) (class in intake_io.dataset.dataset) clean_yaml() (in module intake_io) (in module intake_io.util) close() (intake_io.dataset.dataset.IntakeDataset method) (intake_io.dataset.IntakeDataset method) container (intake_io.source.auto.AutoSource attribute) (intake_io.source.AutoSource attribute) (intake_io.source.bioformats.BioformatsSource attribute) (intake_io.source.BioformatsSource attribute) (intake_io.source.dicom.DicomSource attribute) (intake_io.source.dicom.DicomZipSource attribute) (intake_io.source.DicomSource attribute) (intake_io.source.DicomZipSource attribute) (intake_io.source.directory.DirSource attribute) (intake_io.source.DirSource attribute) (intake_io.source.filepattern.FilePatternSource attribute) (intake_io.source.FilePatternSource attribute) (intake_io.source.imageio.ImageIOSource attribute) (intake_io.source.ImageIOSource attribute) (intake_io.source.klb.KlbSource attribute) (intake_io.source.list.ListSource attribute) (intake_io.source.ListSource attribute) (intake_io.source.nifti.NiftiSource attribute) (intake_io.source.NiftiSource attribute) (intake_io.source.nrrd.NrrdSource attribute) (intake_io.source.NrrdSource attribute) (intake_io.source.tif.TifSource attribute) (intake_io.source.TifSource attribute)

coords (intake_io.source.filepattern.FilePattern property) coords_inner (intake_io.source.filepattern.FilePattern property) coords_outer (intake_io.source.filepattern.FilePattern property) cp_file() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) created() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method)

D

Dataset (class in intake_io.dataset), [1] (class in intake_io.dataset.dataset) DicomSource (class in intake_io.source) (class in intake_io.source.dicom)

DicomZipSource (class in intake_io.source) (class in intake_io.source.dicom) DirSource (class in intake_io.source) (class in intake_io.source.directory) dtype (intake_io.source.filepattern.FilePattern property)

E

expand_path() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method)

F

FilePattern (class in intake_io.source.filepattern) FilePatternSource (class in intake_io.source) (class in intake_io.source.filepattern)

files (intake_io.source.filepattern.FilePattern property) FlywheelFileSystem (class in intake_io.fsspec.flywheel)

G

get() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.source.filepattern.FilePatternSource static method) (intake_io.source.FilePatternSource static method) get_annotations() (intake_io.dataset.AnnotatedDataset method) (intake_io.dataset.dataset.AnnotatedDataset method) get_axes() (in module intake_io) (in module intake_io.util) get_catalog() (in module intake_io) (in module intake_io.util) get_categories() (in module intake_io.dataset), [1] (in module intake_io.dataset.util) get_category() (intake_io.dataset.CategorizedDataset method) (intake_io.dataset.dataset.CategorizedDataset method) get_category_name_column() (intake_io.dataset.AnnotatedDataset method) (intake_io.dataset.dataset.AnnotatedDataset method) get_dtype() (intake_io.dataset.dataset.IntakeDataset method) (intake_io.dataset.IntakeDataset method)

get_file() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) get_file_metadata() (intake_io.source.filepattern.FilePattern method) get_metadata() (intake_io.dataset.dataset.IntakeDataset method) (intake_io.dataset.IntakeDataset method) get_shape() (intake_io.dataset.dataset.IntakeDataset method) (intake_io.dataset.IntakeDataset method) get_shape_groups() (intake_io.source.filepattern.FilePattern method) get_spacing() (in module intake_io) (in module intake_io.util) (intake_io.dataset.dataset.IntakeDataset method) (intake_io.dataset.IntakeDataset method) get_spacing_units() (in module intake_io) (in module intake_io.util) get_spatial_axes() (in module intake_io) (in module intake_io.util)

H

head() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method)

I

ImageIOSource (class in intake_io.source) (class in intake_io.source.imageio) ImageSource (class in intake_io.source.base) imload() (in module intake_io) (in module intake_io.io) imsave() (in module intake_io) (in module intake_io.io) info() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) intake_io module intake_io.autodetect module intake_io.dataset module intake_io.dataset.cache module intake_io.dataset.dataset module intake_io.dataset.split module intake_io.dataset.util module intake_io.fsspec module intake_io.fsspec.flywheel module intake_io.fsspec.render module intake_io.io module intake_io.source module

intake_io.source.auto module intake_io.source.base module intake_io.source.bioformats module intake_io.source.dicom module intake_io.source.directory module intake_io.source.filepattern module intake_io.source.imageio module intake_io.source.klb module intake_io.source.list module intake_io.source.nifti module intake_io.source.nrrd module intake_io.source.tif module intake_io.util module IntakeDataset (class in intake_io.dataset) (class in intake_io.dataset.dataset) isdir() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) isfile() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method)

K

KlbSource (class in intake_io.source.klb)

L

ListSource (class in intake_io.source) (class in intake_io.source.list) load() (intake_io.source.filepattern.FilePattern method)

load_partition() (intake_io.source.filepattern.FilePattern method) ls() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method)

M

makedirs() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) MappedDataset (class in intake_io.dataset) (class in intake_io.dataset.dataset) median_shape() (intake_io.dataset.dataset.IntakeDataset method) (intake_io.dataset.IntakeDataset method) median_spacing() (intake_io.dataset.dataset.IntakeDataset method) (intake_io.dataset.IntakeDataset method) mkdir() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) modified() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) module intake_io intake_io.autodetect intake_io.dataset intake_io.dataset.cache intake_io.dataset.dataset intake_io.dataset.split intake_io.dataset.util intake_io.fsspec intake_io.fsspec.flywheel intake_io.fsspec.render intake_io.io intake_io.source intake_io.source.auto intake_io.source.base intake_io.source.bioformats intake_io.source.dicom intake_io.source.directory intake_io.source.filepattern intake_io.source.imageio intake_io.source.klb intake_io.source.list intake_io.source.nifti intake_io.source.nrrd intake_io.source.tif intake_io.util

N

name (intake_io.source.auto.AutoSource attribute) (intake_io.source.AutoSource attribute) (intake_io.source.bioformats.BioformatsSource attribute) (intake_io.source.BioformatsSource attribute) (intake_io.source.dicom.DicomSource attribute) (intake_io.source.dicom.DicomZipSource attribute) (intake_io.source.DicomSource attribute) (intake_io.source.DicomZipSource attribute) (intake_io.source.directory.DirSource attribute) (intake_io.source.DirSource attribute) (intake_io.source.filepattern.FilePatternSource attribute) (intake_io.source.FilePatternSource attribute) (intake_io.source.imageio.ImageIOSource attribute) (intake_io.source.ImageIOSource attribute) (intake_io.source.klb.KlbSource attribute) (intake_io.source.list.ListSource attribute) (intake_io.source.ListSource attribute) (intake_io.source.nifti.NiftiSource attribute) (intake_io.source.NiftiSource attribute) (intake_io.source.nrrd.NrrdSource attribute) (intake_io.source.NrrdSource attribute) (intake_io.source.tif.TifSource attribute) (intake_io.source.TifSource attribute)

NiftiSource (class in intake_io.source) (class in intake_io.source.nifti) NrrdSource (class in intake_io.source) (class in intake_io.source.nrrd)

O

open() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.source.base.ImageSource method) (intake_io.source.nifti.NiftiSource method) (intake_io.source.NiftiSource method)

P

partition_access (intake_io.source.auto.AutoSource attribute) (intake_io.source.AutoSource attribute) (intake_io.source.bioformats.BioformatsSource attribute) (intake_io.source.BioformatsSource attribute) (intake_io.source.dicom.DicomSource attribute) (intake_io.source.dicom.DicomZipSource attribute) (intake_io.source.DicomSource attribute) (intake_io.source.DicomZipSource attribute) (intake_io.source.directory.DirSource attribute) (intake_io.source.DirSource attribute) (intake_io.source.filepattern.FilePatternSource attribute) (intake_io.source.FilePatternSource attribute) (intake_io.source.imageio.ImageIOSource attribute) (intake_io.source.ImageIOSource attribute) (intake_io.source.klb.KlbSource attribute) (intake_io.source.list.ListSource attribute) (intake_io.source.ListSource attribute) (intake_io.source.nifti.NiftiSource attribute) (intake_io.source.NiftiSource attribute) (intake_io.source.nrrd.NrrdSource attribute) (intake_io.source.NrrdSource attribute) (intake_io.source.tif.TifSource attribute) (intake_io.source.TifSource attribute)

partition_gen() (in module intake_io) (in module intake_io.util) pipe_file() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) protocol (intake_io.fsspec.flywheel.FlywheelFileSystem attribute) (intake_io.fsspec.render.RenderFileSystem attribute) put_file() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method)

R

read() (intake_io.source.bioformats.BioformatsSource method) (intake_io.source.BioformatsSource method) (intake_io.source.dicom.DicomZipSource method) (intake_io.source.DicomZipSource method) (intake_io.source.directory.DirSource method) (intake_io.source.DirSource method) (intake_io.source.filepattern.FilePatternSource method) (intake_io.source.FilePatternSource method) (intake_io.source.imageio.ImageIOSource method) (intake_io.source.ImageIOSource method) (intake_io.source.list.ListSource method) (intake_io.source.ListSource method) (intake_io.source.tif.TifSource method) (intake_io.source.TifSource method)

read_partition() (intake_io.source.list.ListSource method) (intake_io.source.ListSource method) RenderFileSystem (class in intake_io.fsspec.render) rm_file() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) rmdir() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) root_marker (intake_io.fsspec.flywheel.FlywheelFileSystem attribute) (intake_io.fsspec.render.RenderFileSystem attribute)

S

save_klb() (in module intake_io.source.klb) save_nifti() (in module intake_io.source.nifti) save_nrrd() (in module intake_io.source.nrrd) save_tif() (in module intake_io.source.imageio) (in module intake_io.source.tif) shape (intake_io.source.filepattern.FilePattern property) shape_inner (intake_io.source.filepattern.FilePattern property) shape_outer (intake_io.source.filepattern.FilePattern property) shuffle_split() (in module intake_io.dataset) (in module intake_io.dataset.split)

size() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) sort_items() (intake_io.source.list.ListSource method) (intake_io.source.ListSource method) subset_categories() (intake_io.dataset.split.SubsetDataset method) (intake_io.dataset.SubsetDataset method) SubsetDataset (class in intake_io.dataset) (class in intake_io.dataset.split)

T

tail() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method) TifSource (class in intake_io.source) (class in intake_io.source.tif) to_numpy() (in module intake_io) (in module intake_io.util)

to_xarray() (in module intake_io) (in module intake_io.util) (intake_io.source.base.ImageSource method) touch() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method)

V

version (intake_io.source.auto.AutoSource attribute) (intake_io.source.AutoSource attribute) (intake_io.source.bioformats.BioformatsSource attribute) (intake_io.source.BioformatsSource attribute) (intake_io.source.dicom.DicomSource attribute) (intake_io.source.dicom.DicomZipSource attribute) (intake_io.source.DicomSource attribute) (intake_io.source.DicomZipSource attribute) (intake_io.source.directory.DirSource attribute) (intake_io.source.DirSource attribute) (intake_io.source.filepattern.FilePatternSource attribute) (intake_io.source.FilePatternSource attribute) (intake_io.source.imageio.ImageIOSource attribute) (intake_io.source.ImageIOSource attribute) (intake_io.source.klb.KlbSource attribute) (intake_io.source.list.ListSource attribute) (intake_io.source.ListSource attribute) (intake_io.source.nifti.NiftiSource attribute) (intake_io.source.NiftiSource attribute) (intake_io.source.nrrd.NrrdSource attribute) (intake_io.source.NrrdSource attribute) (intake_io.source.tif.TifSource attribute) (intake_io.source.TifSource attribute)

W

walk() (intake_io.fsspec.flywheel.FlywheelFileSystem method) (intake_io.fsspec.render.RenderFileSystem method)

Y

yaml() (intake_io.source.base.ImageSource method)